Dark Kinase Knowledgebase Development Team
Matthew Berginski
Matthew is a research scientist at the University of North Carolina in the
departments of Biomedical Engineering and Pharmacology. He works as a
bioinformatics specialist focusing on organizing and analyzing data related
to the dark kinases.
Nienke Moret
Nienke is a PhD candidate in Harvard's Chemical Biology program and the
Therapeutics Graduate Program of Harvard's Initiative in Therapeutic
Sciences. She works in the Laboratory of Systems Pharmacology, mentored
primarily by Peter Sorger, where she studies functional polypharmacology --
the phenomenon that small molecule drugs derive efficacy from targeting
multiple proteins.
Changchang Liu
Changchang is a PhD candidate in Harvard's Chemical Biology department. She
works in Peter Sorger's lab, part of the Laboratory of Systems Pharmacology.
Her project focuses on predicting binding affinities between small molecules
and kinases using machine learning methods.
Peter Sorger
Peter’s research focuses on the systems biology of signal transduction
networks controlling cell proliferation and death, the dysregulation of
these networks in cancer and inflammatory diseases and the mechanisms of
action of therapeutic drugs targeting signaling proteins. His group uses
mathematical and experimental approaches to construct and test
computational models of signaling in human and murine cells as a means to
understand and eventually predict the responses of cells and tumors to
drugs applied individually and in combination. The Sorger group also
develops open-source software for analyzing biological networks and it
participates in multiple collaborative programs working to improve data
reproducibility.
As founding head of the Harvard Program in Therapeutic Sciences
(HiTS), Peter leads a university-wide effort to advance the basic and
translational science used to develop new medicines, identify responsive
patients and evaluate new drugs via precision clinical trials. He also
directs the primary research program in HiTS, the Laboratory of Systems
Pharmacology, which joins together faculty members from six institutions
in a multi-disciplinary effort to develop and apply new concepts in drug
discovery. Peter was co-founder of Merrimack Pharmaceuticals and Glencoe
Software and is an adviser to multiple public and private companies and
research institutes in the US, Europe and Japan.
Shawn Gomez
Shawn’s research is in the area of systems biology, with a particular
emphasis on understanding the architecture and dynamics of gene-regulatory
and signal transduction networks. With an emphasis on the protein kinome
in cancer and infectious disease, a significant portion of the lab’s work
centers on the analysis and modeling of biomolecular systems at multiple
scales - spanning statistical and machine learning techniques to more
classical systems modeling approaches. This work is paired with
experimental efforts that focus on improving our understanding of network-
and systems-level principles of cellular behavior.
As Director of the FastTraCS program, Shawn further leads a
multidisciplinary effort to more rapidly translate basic science research
into tangible solutions that improve patient outcomes. A component of
UNC’s NCTraCS Institute and funded as part of UNC’s Clinical and
Translational Sciences Award (CTSA) through NCATS, FastTraCS efforts span
the range of drug, device and diagnostics development, with a strong focus
on the identification of high potential unmet clinical needs and emerging
healthcare opportunities within the UNC Healthcare System. The program has
a strong focus on derisking technologies for commercial development
through internal rapid prototyping and development or in collaboration
with academic and industry partners.
DRGC-Kinase Members
- Gary Johnson - University of North Carolina at Chapel Hill
- Tim Wilson - University of North Carolina at Chapel Hill
- Ben Major - Washington University in St. Louis
- Reid Townsend - Washington University in St. Louis